recipe bioconductor-iseehub

iSEE for the Bioconductor ExperimentHub

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/iSEEhub.html

License:

Artistic-2.0

Recipe:

/bioconductor-iseehub/meta.yaml

This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.

package bioconductor-iseehub

versions:

1.4.0-0,  1.1.1-0,  1.0.0-0

depends bioconductor-annotationhub:

>=3.10.0,<3.11.0

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends bioconductor-isee:

>=2.14.0,<2.15.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-singlecellexperiment:

>=1.24.0,<1.25.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-biocmanager:

depends r-dt:

depends r-rintrojs:

depends r-shiny:

depends r-shinydashboard:

depends r-shinyjs:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-iseehub

and update with::

   mamba update bioconductor-iseehub

To create a new environment, run:

mamba create --name myenvname bioconductor-iseehub

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-iseehub:<tag>

(see `bioconductor-iseehub/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-iseehub/README.html)