recipe bioconductor-iseeindex

iSEE extension for a landing page to a custom collection of data sets

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/iSEEindex.html

License:

Artistic-2.0

Recipe:

/bioconductor-iseeindex/meta.yaml

This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.

package bioconductor-iseeindex

versions:

1.0.0-0

depends bioconductor-biocfilecache:

>=2.10.0,<2.11.0

depends bioconductor-isee:

>=2.14.0,<2.15.0

depends bioconductor-singlecellexperiment:

>=1.24.0,<1.25.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-dt:

depends r-paws.storage:

depends r-rintrojs:

depends r-shiny:

depends r-shinydashboard:

depends r-shinyjs:

depends r-stringr:

depends r-urltools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-iseeindex

and update with::

   mamba update bioconductor-iseeindex

To create a new environment, run:

mamba create --name myenvname bioconductor-iseeindex

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-iseeindex:<tag>

(see `bioconductor-iseeindex/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-iseeindex/README.html)