recipe bioconductor-isoformswitchanalyzer

Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/IsoformSwitchAnalyzeR.html

License:

GPL (>= 2)

Recipe:

/bioconductor-isoformswitchanalyzer/meta.yaml

Links:

biotools: IsoformSwitchAnalyzeR, doi: 10.1158/1541-7786.MCR-16-0459

Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

package bioconductor-isoformswitchanalyzer

(downloads) docker_bioconductor-isoformswitchanalyzer

Versions:
1.20.0-11.20.0-01.16.0-21.16.0-11.16.0-01.14.0-01.12.0-11.12.0-01.10.0-0

1.20.0-11.20.0-01.16.0-21.16.0-11.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-isoformswitchanalyzer

and update with:

conda update bioconductor-isoformswitchanalyzer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-isoformswitchanalyzer:<tag>

(see bioconductor-isoformswitchanalyzer/tags for valid values for <tag>)

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