recipe bioconductor-isolde

Integrative Statistics of alleLe Dependent Expression

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ISoLDE.html

License:

GPL (>= 2.0)

Recipe:

/bioconductor-isolde/meta.yaml

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

package bioconductor-isolde

(downloads) docker_bioconductor-isolde

versions:
1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.22.0-2,  1.22.0-1, 

1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-2,  1.26.0-1,  1.26.0-0,  1.22.0-2,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.15.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.1-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-isolde

and update with::

   mamba update bioconductor-isolde

To create a new environment, run:

mamba create --name myenvname bioconductor-isolde

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-isolde:<tag>

(see `bioconductor-isolde/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-isolde/README.html)