- recipe bioconductor-isomirs
Analyze isomiRs and miRNAs from small RNA-seq
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/isomiRs.html
- License
MIT + file LICENSE
- Recipe
- Links
biotools: isomirs, doi: 10.1093/bioinformatics/btv632
Characterization of miRNAs and isomiRs, clustering and differential expression.
- package bioconductor-isomirs¶
-
- Versions
1.22.0-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.22.0-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.0.3-0
,1.0.1-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-degreport
>=1.30.0,<1.31.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-isomirs
and update with:
conda update bioconductor-isomirs
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-isomirs:<tag>
(see bioconductor-isomirs/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-isomirs/README.html)