recipe bioconductor-isomirs

Analyze isomiRs and miRNAs from small RNA-seq

Homepage

https://bioconductor.org/packages/3.11/bioc/html/isomiRs.html

License

MIT + file LICENSE

Recipe

/bioconductor-isomirs/meta.yaml

Links

biotools: isomirs, doi: 10.1093/bioinformatics/btv632

Characterization of miRNAs and isomiRs, clustering and differential expression.

package bioconductor-isomirs

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.0.3-0,  1.0.1-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-degreport >=1.24.0,<1.25.0

• bioconductor-deseq2 >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-assertive.sets

• r-base >=4.0,<4.1.0a0

• r-broom

• r-cluster

• r-cowplot

• r-discriminer

• r-dplyr

• r-ggally

• r-ggplot2

• r-gplots

• r-gridextra

• r-gtools

• r-rcolorbrewer

• r-readr

• r-reshape

• r-rlang

• r-stringr

• r-tibble

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-isomirs

and update with:

conda update bioconductor-isomirs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-isomirs:<tag>

(see bioconductor-isomirs/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-isomirs/README.html)