recipe bioconductor-ivas

Identification of genetic Variants affecting Alternative Splicing

Homepage

https://bioconductor.org/packages/3.14/bioc/html/IVAS.html

License

GPL-2

Recipe

/bioconductor-ivas/meta.yaml

Links

biotools: ivas, doi: 10.1007/s13258-016-0466-7

Identification of genetic variants affecting alternative splicing.

package bioconductor-ivas

Versions

2.14.0-0,  2.12.0-0,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.0-1,  2.2.0-0,  2.0.0-0, 

2.14.0-0,  2.12.0-0,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.0-1,  2.2.0-0,  2.0.0-0,  1.98.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-doparallel

• r-foreach

• r-ggfortify

• r-ggplot2

• r-lme4

• r-matrix

Required By

• bioconductor-imas

• bioconductor-aspediafi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ivas

and update with:

conda update bioconductor-ivas

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ivas:<tag>

(see bioconductor-ivas/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ivas/README.html)