recipe bioconductor-katdetectr

Detection, Characterization and Visualization of Kataegis in Sequencing Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/katdetectr.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-katdetectr/meta.yaml

Kataegis refers to the occurrence of regional hypermutation and is a phenomenon observed in a wide range of malignancies. Using changepoint detection katdetectr aims to identify putative kataegis foci from common data-formats housing genomic variants. Katdetectr has shown to be a robust package for the detection, characterization and visualization of kataegis.

package bioconductor-katdetectr

(downloads) docker_bioconductor-katdetectr

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-katdetectr

and update with:

conda update bioconductor-katdetectr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-katdetectr:<tag>

(see bioconductor-katdetectr/tags for valid values for <tag>)

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