- recipe bioconductor-keggandmetacoredzpathwaysgeo
Disease Datasets from GEO
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/KEGGandMetacoreDzPathwaysGEO.html
- License
GPL-2
- Recipe
This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.
- package bioconductor-keggandmetacoredzpathwaysgeo¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-keggandmetacoredzpathwaysgeo
and update with:
conda update bioconductor-keggandmetacoredzpathwaysgeo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo:<tag>
(see bioconductor-keggandmetacoredzpathwaysgeo/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-keggandmetacoredzpathwaysgeo/README.html)