recipe bioconductor-keggandmetacoredzpathwaysgeo

Disease Datasets from GEO

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/KEGGandMetacoreDzPathwaysGEO.html

License

GPL-2

Recipe

/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

package bioconductor-keggandmetacoredzpathwaysgeo

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.9.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-gseabenchmarker

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-keggandmetacoredzpathwaysgeo

and update with:

conda update bioconductor-keggandmetacoredzpathwaysgeo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo:<tag>

(see bioconductor-keggandmetacoredzpathwaysgeo/tags for valid values for <tag>)

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