Package Recipe 'bioconductor-keggandmetacoredzpathwaysgeo'

recipe bioconductor-keggandmetacoredzpathwaysgeo

Disease Datasets from GEO

Homepage:: https://bioconductor.org/packages/3.16/data/experiment/html/KEGGandMetacoreDzPathwaysGEO.html
License:: GPL-2
Recipe:: /bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

package bioconductor-keggandmetacoredzpathwaysgeo¶

Versions:

1.18.0-0, 1.14.0-1, 1.14.0-0, 1.12.0-0, 1.10.0-1, 1.10.0-0, 1.9.0-0, 1.8.0-0, 1.6.0-0,

1.18.0-0, 1.14.0-1, 1.14.0-0, 1.12.0-0, 1.10.0-1, 1.10.0-0, 1.9.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-1, 1.2.0-0

Depends:

bioconductor-biobase >=2.58.0,<2.59.0
bioconductor-biocgenerics >=0.44.0,<0.45.0
bioconductor-data-packages >=20221104
curl
r-base >=4.2,<4.3.0a0

Required By:

bioconductor-gseabenchmarker

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-keggandmetacoredzpathwaysgeo

and update with:

conda update bioconductor-keggandmetacoredzpathwaysgeo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo:<tag>

(see bioconductor-keggandmetacoredzpathwaysgeo/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

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