recipe bioconductor-keggandmetacoredzpathwaysgeo

Disease Datasets from GEO

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/KEGGandMetacoreDzPathwaysGEO.html

License

GPL-2

Recipe

/bioconductor-keggandmetacoredzpathwaysgeo/meta.yaml

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

package bioconductor-keggandmetacoredzpathwaysgeo

(downloads) docker_bioconductor-keggandmetacoredzpathwaysgeo

Versions

1.8.0-0, 1.6.0-0, 1.4.0-1, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-keggandmetacoredzpathwaysgeo

and update with:

conda update bioconductor-keggandmetacoredzpathwaysgeo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo:<tag>

(see bioconductor-keggandmetacoredzpathwaysgeo/tags for valid values for <tag>)