recipe bioconductor-kegglincs

See what is going on ‘under the hood’ of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/KEGGlincs.html

License

GPL-3

Recipe

/bioconductor-kegglincs/meta.yaml

Links

biotools: kegglincs, doi: 10.7490/f1000research.1113436.1

package bioconductor-kegglincs

(downloads) docker_bioconductor-kegglincs

Versions

1.8.0-0, 1.6.2-0, 1.4.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-hgu133a.db

>=3.2.0,<3.3.0

Depends bioconductor-kegggraph

>=1.42.0,<1.43.0

Depends bioconductor-keggrest

>=1.22.0,<1.23.0

Depends bioconductor-kodata

>=1.8.0,<1.9.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-gtools

Depends r-httr

Depends r-igraph

Depends r-plyr

Depends r-rjsonio

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-kegglincs

and update with:

conda update bioconductor-kegglincs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kegglincs:<tag>

(see bioconductor-kegglincs/tags for valid values for <tag>)