recipe bioconductor-kegglincs

See what is going on ‘under the hood’ of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/KEGGlincs.html

License

GPL-3

Recipe

/bioconductor-kegglincs/meta.yaml

Links

biotools: kegglincs, doi: 10.7490/f1000research.1113436.1

package bioconductor-kegglincs

Versions

1.10.0-1, 1.8.0-0, 1.6.2-0, 1.4.0-0

Depends

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-hgu133a.db >=3.2.0,<3.3.0

• bioconductor-kegggraph >=1.44.0,<1.45.0

• bioconductor-keggrest >=1.24.0,<1.25.0

• bioconductor-kodata >=1.10.0,<1.11.0

• bioconductor-org.hs.eg.db >=3.8.0,<3.9.0

• r-base >=3.6,<3.7.0a0

• r-gtools

• r-httr

• r-igraph

• r-plyr

• r-rjsonio

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-kegglincs

and update with:

conda update bioconductor-kegglincs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kegglincs:<tag>

(see bioconductor-kegglincs/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kegglincs/README.html)