- recipe bioconductor-kegglincs
Visualize all edges within a KEGG pathway and overlay LINCS data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/KEGGlincs.html
- License:
GPL-3
- Recipe:
- Links:
biotools: kegglincs, doi: 10.7490/f1000research.1113436.1
See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.
- package bioconductor-kegglincs¶
-
- Versions:
1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-1
,1.8.0-0
,1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-1
,1.8.0-0
,1.6.2-0
,1.4.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-hgu133a.db
>=3.13.0,<3.14.0
bioconductor-kegggraph
>=1.58.0,<1.59.0
bioconductor-keggrest
>=1.38.0,<1.39.0
bioconductor-kodata
>=1.24.0,<1.25.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
cytoscape
>=3.3.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-kegglincs
and update with:
conda update bioconductor-kegglincs
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-kegglincs:<tag>
(see bioconductor-kegglincs/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-kegglincs/README.html)