recipe bioconductor-kegglincs

Visualize all edges within a KEGG pathway and overlay LINCS data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/KEGGlincs.html

License

GPL-3

Recipe

/bioconductor-kegglincs/meta.yaml

Links

biotools: kegglincs, doi: 10.7490/f1000research.1113436.1

See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

package bioconductor-kegglincs

Versions

1.14.0-0,  1.12.0-1,  1.10.0-1,  1.8.0-0,  1.6.2-0,  1.4.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-hgu133a.db >=3.2.0,<3.3.0

• bioconductor-kegggraph >=1.48.0,<1.49.0

• bioconductor-keggrest >=1.28.0,<1.29.0

• bioconductor-kodata >=1.14.0,<1.15.0

• bioconductor-org.hs.eg.db >=3.11.0,<3.12.0

• cytoscape >=3.3.0

• r-base >=4.0,<4.1.0a0

• r-gtools

• r-httr

• r-igraph

• r-plyr

• r-rjsonio

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-kegglincs

and update with:

conda update bioconductor-kegglincs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kegglincs:<tag>

(see bioconductor-kegglincs/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kegglincs/README.html)