recipe bioconductor-kegglincs

Visualize all edges within a KEGG pathway and overlay LINCS data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/KEGGlincs.html

License:

GPL-3

Recipe:

/bioconductor-kegglincs/meta.yaml

Links:

biotools: kegglincs, doi: 10.7490/f1000research.1113436.1

See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

package bioconductor-kegglincs

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-1,  1.8.0-0, 

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-1,  1.8.0-0,  1.6.2-0,  1.4.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-hgu133a.db >=3.13.0,<3.14.0

• bioconductor-kegggraph >=1.58.0,<1.59.0

• bioconductor-keggrest >=1.38.0,<1.39.0

• bioconductor-kodata >=1.24.0,<1.25.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• cytoscape >=3.3.0

• r-base >=4.2,<4.3.0a0

• r-gtools

• r-httr

• r-igraph

• r-plyr

• r-rjsonio

• r-xml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-kegglincs

and update with:

conda update bioconductor-kegglincs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-kegglincs:<tag>

(see bioconductor-kegglincs/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-kegglincs/README.html)