recipe bioconductor-lace

Longitudinal Analysis of Cancer Evolution (LACE)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/LACE.html

License

file LICENSE

Recipe

/bioconductor-lace/meta.yaml

LACE is an algorithmic framework that processes single-cell somatic mutation profiles from cancer samples collected at different time points and in distinct experimental settings, to produce longitudinal models of cancer evolution. The approach solves a Boolean Matrix Factorization problem with phylogenetic constraints, by maximizing a weighed likelihood function computed on multiple time points.

package bioconductor-lace

(downloads) docker_bioconductor-lace

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-lace

and update with:

conda update bioconductor-lace

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lace:<tag>

(see bioconductor-lace/tags for valid values for <tag>)