recipe bioconductor-lace

Longitudinal Analysis of Cancer Evolution (LACE)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/LACE.html

License:

file LICENSE

Recipe:

/bioconductor-lace/meta.yaml

LACE is an algorithmic framework that processes single-cell somatic mutation profiles from cancer samples collected at different time points and in distinct experimental settings, to produce longitudinal models of cancer evolution. The approach solves a Boolean Matrix Factorization problem with phylogenetic constraints, by maximizing a weighed likelihood function computed on multiple time points.

package bioconductor-lace

(downloads) docker_bioconductor-lace

Versions:

2.2.0-01.6.0-01.4.0-01.2.1-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lace

and update with:

conda update bioconductor-lace

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lace:<tag>

(see bioconductor-lace/tags for valid values for <tag>)

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