recipe bioconductor-lefser

R implementation of the LEfSE method for microbiome biomarker discovery

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/lefser.html

License:

Artistic-2.0

Recipe:

/bioconductor-lefser/meta.yaml

lefser is an implementation in R of the popular "LDA Effect Size (LEfSe)" method for microbiome biomarker discovery. It uses the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis to find biomarkers of groups and sub-groups.

package bioconductor-lefser

(downloads) docker_bioconductor-lefser

Versions:

1.8.0-01.4.0-01.2.0-01.0.0-21.0.0-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lefser

and update with:

conda update bioconductor-lefser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lefser:<tag>

(see bioconductor-lefser/tags for valid values for <tag>)

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