recipe bioconductor-liebermanaidenhic2009

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/LiebermanAidenHiC2009.html

License:

LGPL

Recipe:

/bioconductor-liebermanaidenhic2009/meta.yaml

This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776

package bioconductor-liebermanaidenhic2009

(downloads) docker_bioconductor-liebermanaidenhic2009

versions:
0.40.0-0,  0.38.0-0,  0.35.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.26.0-0, 

0.40.0-0,  0.38.0-0,  0.35.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.26.0-0,  0.24.0-0,  0.22.0-1,  0.20.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

depends r-kernsmooth:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-liebermanaidenhic2009

and update with::

   mamba update bioconductor-liebermanaidenhic2009

To create a new environment, run:

mamba create --name myenvname bioconductor-liebermanaidenhic2009

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-liebermanaidenhic2009:<tag>

(see `bioconductor-liebermanaidenhic2009/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-liebermanaidenhic2009/README.html)