recipe bioconductor-linnorm

Linear model and normality based normalization and transformation method (Linnorm)

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Linnorm.html

License

MIT + file LICENSE

Recipe

/bioconductor-linnorm/meta.yaml

Linnorm is an algorithm for normalizing and transforming RNA-seq, single cell RNA-seq, ChIP-seq count data or any large scale count data. It has been independently reviewed by Tian et al. on Nature Methods (https://doi.org/10.1038/s41592-019-0425-8). Linnorm can work with raw count, CPM, RPKM, FPKM and TPM.

package bioconductor-linnorm

(downloads) docker_bioconductor-linnorm

Versions

2.10.0-0, 2.8.0-1, 2.8.0-0, 2.6.1-0, 2.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-linnorm

and update with:

conda update bioconductor-linnorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-linnorm:<tag>

(see bioconductor-linnorm/tags for valid values for <tag>)