recipe bioconductor-listeretalbsseq

BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/ListerEtAlBSseq.html

License:

Artistic 2.0

Recipe:

/bioconductor-listeretalbsseq/meta.yaml

Base resolution bisulfite sequencing data of Human DNA methylomes

package bioconductor-listeretalbsseq

(downloads) docker_bioconductor-listeretalbsseq

versions:
1.34.0-0,  1.32.1-0,  1.30.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0, 

1.34.0-0,  1.32.1-0,  1.30.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-1,  1.14.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-methylpipe:

>=1.36.0,<1.37.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-listeretalbsseq

and update with::

   mamba update bioconductor-listeretalbsseq

To create a new environment, run:

mamba create --name myenvname bioconductor-listeretalbsseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-listeretalbsseq:<tag>

(see `bioconductor-listeretalbsseq/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-listeretalbsseq/README.html)