recipe bioconductor-logicfs

Identification of SNP Interactions

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/logicFS.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-logicfs/meta.yaml

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

package bioconductor-logicfs

(downloads) docker_bioconductor-logicfs

versions:
2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.14.0-0,  2.12.0-0,  2.10.0-1,  2.10.0-0,  2.8.0-0, 

2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.14.0-0,  2.12.0-0,  2.10.0-1,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.0-1,  2.4.0-0,  2.2.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-logicreg:

depends r-mcbiopi:

depends r-survival:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-logicfs

and update with::

   mamba update bioconductor-logicfs

To create a new environment, run:

mamba create --name myenvname bioconductor-logicfs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-logicfs:<tag>

(see `bioconductor-logicfs/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-logicfs/README.html)