recipe bioconductor-lpe

Methods for analyzing microarray data using Local Pooled Error (LPE) method

Homepage

https://bioconductor.org/packages/3.11/bioc/html/LPE.html

License

LGPL

Recipe

/bioconductor-lpe/meta.yaml

Links

biotools: lpe, doi: 10.1093/bioinformatics/btg264

This LPE library is used to do significance analysis of microarray data with small number of replicates. It uses resampling based FDR adjustment, and gives less conservative results than traditional 'BH' or 'BY' procedures. Data accepted is raw data in txt format from MAS4, MAS5 or dChip. Data can also be supplied after normalization. LPE library is primarily used for analyzing data between two conditions. To use it for paired data, see LPEP library. For using LPE in multiple conditions, use HEM library.

package bioconductor-lpe

Versions

1.62.0-0,  1.60.0-0,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-0

Depends

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-lpeadj

• bioconductor-plpe

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-lpe

and update with:

conda update bioconductor-lpe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lpe:<tag>

(see bioconductor-lpe/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lpe/README.html)