recipe bioconductor-lpeadj

A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.

Homepage

https://bioconductor.org/packages/3.11/bioc/html/LPEadj.html

License

LGPL

Recipe

/bioconductor-lpeadj/meta.yaml

Links

biotools: lpeadj, doi: 10.1038/nmeth.3252

Two options are added to the LPE algorithm. The original LPE method sets all variances below the max variance in the ordered distribution of variances to the maximum variance. in LPEadj this option is turned off by default. The second option is to use a variance adjustment based on sample size rather than pi/2. By default the LPEadj uses the sample size based variance adjustment.

package bioconductor-lpeadj

(downloads) docker_bioconductor-lpeadj

Versions

1.48.0-01.46.0-01.44.0-11.44.0-01.42.0-01.40.0-01.38.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-lpeadj

and update with:

conda update bioconductor-lpeadj

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lpeadj:<tag>

(see bioconductor-lpeadj/tags for valid values for <tag>)