recipe bioconductor-lrcelltypemarkers

Marker gene information for LRcell R Bioconductor package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/LRcellTypeMarkers.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-lrcelltypemarkers/meta.yaml

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

package bioconductor-lrcelltypemarkers

(downloads) docker_bioconductor-lrcelltypemarkers

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-lrcelltypemarkers

and update with::

   mamba update bioconductor-lrcelltypemarkers

To create a new environment, run:

mamba create --name myenvname bioconductor-lrcelltypemarkers

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-lrcelltypemarkers:<tag>

(see `bioconductor-lrcelltypemarkers/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lrcelltypemarkers/README.html)