Package Recipe 'bioconductor-lrcelltypemarkers'

recipe bioconductor-lrcelltypemarkers

Marker gene information for LRcell R Bioconductor package

Homepage:: https://bioconductor.org/packages/3.16/data/experiment/html/LRcellTypeMarkers.html
License:: MIT + file LICENSE
Recipe:: /bioconductor-lrcelltypemarkers/meta.yaml

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

package bioconductor-lrcelltypemarkers¶

Versions:

1.6.0-0, 1.2.0-1, 1.2.0-0, 1.0.0-0

Depends:

bioconductor-data-packages >=20221108
bioconductor-experimenthub >=2.6.0,<2.7.0
curl
r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lrcelltypemarkers

and update with:

conda update bioconductor-lrcelltypemarkers

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lrcelltypemarkers:<tag>

(see bioconductor-lrcelltypemarkers/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lrcelltypemarkers/README.html)