recipe bioconductor-lumibarnes

Barnes Benchmark Illumina Tissues Titration Data

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/lumiBarnes.html

License:

LGPL

Recipe:

/bioconductor-lumibarnes/meta.yaml

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

package bioconductor-lumibarnes

Versions:

1.38.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1, 

1.38.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-data-packages >=20221111

• bioconductor-lumi >=2.50.0,<2.51.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lumibarnes

and update with:

conda update bioconductor-lumibarnes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lumibarnes:<tag>

(see bioconductor-lumibarnes/tags for valid values for <tag>)

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