recipe bioconductor-lumihumanidmapping

Illumina Identifier mapping for Human

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/lumiHumanIDMapping.html

License:

The Artistic License, Version 2.0

Recipe:

/bioconductor-lumihumanidmapping/meta.yaml

This package includes mappings information between different types of Illumina IDs of Illumina Human chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Human chips to RefSeq IDs with mapping qualities information.

package bioconductor-lumihumanidmapping

(downloads) docker_bioconductor-lumihumanidmapping

versions:
1.10.1-12,  1.10.1-11,  1.10.1-10,  1.10.1-9,  1.10.1-8,  1.10.1-7,  1.10.1-6,  1.10.1-5,  1.10.1-4, 

1.10.1-12,  1.10.1-11,  1.10.1-10,  1.10.1-9,  1.10.1-8,  1.10.1-7,  1.10.1-6,  1.10.1-5,  1.10.1-4,  1.10.1-3,  1.10.1-2,  1.10.1-0

depends bioconductor-annotationdbi:

>=1.64.0,<1.65.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-lumi:

>=2.54.0,<2.55.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

depends r-dbi:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-lumihumanidmapping

and update with::

   mamba update bioconductor-lumihumanidmapping

To create a new environment, run:

mamba create --name myenvname bioconductor-lumihumanidmapping

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-lumihumanidmapping:<tag>

(see `bioconductor-lumihumanidmapping/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lumihumanidmapping/README.html)