recipe bioconductor-lungcancerlines

Reads from Two Lung Cancer Cell Lines

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/LungCancerLines.html

License:

Artistic-2.0

Recipe:

/bioconductor-lungcancerlines/meta.yaml

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

package bioconductor-lungcancerlines

Versions:

0.36.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.26.0-0,  0.24.0-0,  0.22.0-1, 

0.36.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.26.0-0,  0.24.0-0,  0.22.0-1,  0.20.0-0

Depends:

• bioconductor-data-packages >=20221107

• bioconductor-rsamtools >=2.14.0,<2.15.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lungcancerlines

and update with:

conda update bioconductor-lungcancerlines

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lungcancerlines:<tag>

(see bioconductor-lungcancerlines/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lungcancerlines/README.html)