recipe bioconductor-lymphoseq

Analyze high-throughput sequencing of T and B cell receptors

Homepage

https://bioconductor.org/packages/3.12/bioc/html/LymphoSeq.html

License

Artistic-2.0

Recipe

/bioconductor-lymphoseq/meta.yaml

This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay. Its input comes from tab-separated value (.tsv) files exported from the ImmunoSEQ analyzer.

package bioconductor-lymphoseq

(downloads) docker_bioconductor-lymphoseq

Versions

1.18.0-01.16.0-01.14.0-01.12.0-11.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-lymphoseq

and update with:

conda update bioconductor-lymphoseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lymphoseq:<tag>

(see bioconductor-lymphoseq/tags for valid values for <tag>)