- recipe bioconductor-maaslin2
"Multivariable Association Discovery in Population-scale Meta-omics Studies"
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/Maaslin2.html
- License
MIT + file LICENSE
- Recipe
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.
- package bioconductor-maaslin2¶
-
- Versions
1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.0.0-0
- Depends
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-lpsymphony
>=1.22.0,<1.23.0
bioconductor-metagenomeseq
>=1.36.0,<1.37.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-maaslin2
and update with:
conda update bioconductor-maaslin2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-maaslin2:<tag>
(see bioconductor-maaslin2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-maaslin2/README.html)