recipe bioconductor-maaslin2

"Multivariable Association Discovery in Population-scale Meta-omics Studies"

Homepage

https://bioconductor.org/packages/3.14/bioc/html/Maaslin2.html

License

MIT + file LICENSE

Recipe

/bioconductor-maaslin2/meta.yaml

MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.

package bioconductor-maaslin2

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.0.0-0

Depends

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-lpsymphony >=1.22.0,<1.23.0

• bioconductor-metagenomeseq >=1.36.0,<1.37.0

• r-base >=4.1,<4.2.0a0

• r-biglm

• r-car

• r-chemometrics

• r-cplm

• r-data.table

• r-dplyr

• r-ggplot2

• r-glmmtmb

• r-hash

• r-lme4

• r-lmertest

• r-logging

• r-mass

• r-optparse

• r-pbapply

• r-pcapp

• r-pheatmap

• r-pscl

• r-robustbase

• r-vegan

Required By

• bioconductor-mmuphin

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-maaslin2

and update with:

conda update bioconductor-maaslin2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-maaslin2:<tag>

(see bioconductor-maaslin2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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