recipe bioconductor-macat

This library contains functions to investigate links between differential gene expression and the chromosomal localization of the genes. MACAT is motivated by the common observation of phenomena involving large chromosomal regions in tumor cells. MACAT is the implementation of a statistical approach for identifying significantly differentially expressed chromosome regions. The functions have been tested on a publicly available data set about acute lymphoblastic leukemia (Yeoh et al.Cancer Cell 2002), which is provided in the library ‘stjudem’.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/macat.html

License

Artistic-2.0

Recipe

/bioconductor-macat/meta.yaml

Links

biotools: macat

package bioconductor-macat

(downloads) docker_bioconductor-macat

Versions

1.56.0-0, 1.54.0-0, 1.52.0-0, 1.50.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-macat

and update with:

conda update bioconductor-macat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-macat:<tag>

(see bioconductor-macat/tags for valid values for <tag>)