recipe bioconductor-macorrplot

Visualize artificial correlation in microarray data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/maCorrPlot.html

License:

GPL (>= 2)

Recipe:

/bioconductor-macorrplot/meta.yaml

Links:

biotools: macorrplot, doi: 10.1038/nmeth.3252

Graphically displays correlation in microarray data that is due to insufficient normalization

package bioconductor-macorrplot

versions:

1.72.0-0,  1.70.0-0,  1.68.0-0,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0, 

1.72.0-0,  1.70.0-0,  1.68.0-0,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-lattice:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-macorrplot

and update with::

   mamba update bioconductor-macorrplot

To create a new environment, run:

mamba create --name myenvname bioconductor-macorrplot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-macorrplot:<tag>

(see `bioconductor-macorrplot/tags`_ for valid values for ``<tag>``)

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Link to this page

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