recipe bioconductor-macrophage

Human macrophage immune response

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/macrophage.html

License:

GPL (>= 2)

Recipe:

/bioconductor-macrophage/meta.yaml

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

package bioconductor-macrophage

(downloads) docker_bioconductor-macrophage

versions:
1.18.0-0,  1.16.0-0,  1.13.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-0, 

1.18.0-0,  1.16.0-0,  1.13.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-macrophage

and update with::

   mamba update bioconductor-macrophage

To create a new environment, run:

mamba create --name myenvname bioconductor-macrophage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-macrophage:<tag>

(see `bioconductor-macrophage/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-macrophage/README.html)