recipe bioconductor-macsdata

Test datasets for the MACSr package






Test datasets from the MACS3 test examples are use in the examples of the `MACSr` package. All 9 datasets are uploaded to the `ExperimentHub`. The original data can be found at:

package bioconductor-macsdata

(downloads) docker_bioconductor-macsdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-macsdata

and update with::

   mamba update bioconductor-macsdata

To create a new environment, run:

mamba create --name myenvname bioconductor-macsdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-macsdata/tags`_ for valid values for ``<tag>``)

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