recipe bioconductor-made4

Multivariate analysis of microarray data using ADE4

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/made4.html

License:

Artistic-2.0

Recipe:

/bioconductor-made4/meta.yaml

Links:

biotools: made4

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

package bioconductor-made4

(downloads) docker_bioconductor-made4

versions:
1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.61.0-0,  1.60.0-0, 

1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.61.0-0,  1.60.0-0,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.44.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-ade4:

depends r-base:

>=4.3,<4.4.0a0

depends r-gplots:

depends r-rcolorbrewer:

depends r-scatterplot3d:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-made4

and update with::

   mamba update bioconductor-made4

To create a new environment, run:

mamba create --name myenvname bioconductor-made4

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-made4:<tag>

(see `bioconductor-made4/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-made4/README.html)