- recipe bioconductor-madseq
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/MADSEQ.html
- License:
GPL(>=2)
- Recipe:
- Links:
biotools: madseq, doi: 10.1101/142299
The MADSEQ package provides a group of hierarchical Bayeisan models for the detection of mosaic aneuploidy, the inference of the type of aneuploidy and also for the quantification of the fraction of aneuploid cells in the sample.
- package bioconductor-madseq¶
-
- Versions:
1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.6.1-0
,1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.6.1-0
,1.4.1-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.0,<1.5.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
bioconductor-zlibbioc
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
r-rjags
>=4.6
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-madseq
and update with:
conda update bioconductor-madseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-madseq:<tag>
(see bioconductor-madseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-madseq/README.html)