recipe bioconductor-mafdb.exac.r1.0.hs37d5

Minor allele frequency data from ExAC release 1.0 for hs37d5






Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0) for the human genome version hs37d5.

package bioconductor-mafdb.exac.r1.0.hs37d5

(downloads) docker_bioconductor-mafdb.exac.r1.0.hs37d5



depends bioconductor-bsgenome:


depends bioconductor-data-packages:


depends bioconductor-genomeinfodb:


depends bioconductor-genomicranges:


depends bioconductor-genomicscores:


depends bioconductor-iranges:


depends bioconductor-s4vectors:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mafdb.exac.r1.0.hs37d5

and update with::

   mamba update bioconductor-mafdb.exac.r1.0.hs37d5

To create a new environment, run:

mamba create --name myenvname bioconductor-mafdb.exac.r1.0.hs37d5

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-mafdb.exac.r1.0.hs37d5/tags`_ for valid values for ``<tag>``)

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