recipe bioconductor-mafdb.exac.r1.0.nontcga.grch38

Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for GRCh38

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/MafDb.ExAC.r1.0.nonTCGA.GRCh38.html

License:

Artistic-2.0

Recipe:

/bioconductor-mafdb.exac.r1.0.nontcga.grch38/meta.yaml

Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version GRCh38.

package bioconductor-mafdb.exac.r1.0.nontcga.grch38

versions:

3.10.0-9,  3.10.0-8,  3.10.0-7,  3.10.0-6,  3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1, 

3.10.0-9,  3.10.0-8,  3.10.0-7,  3.10.0-6,  3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0,  3.7.0-2,  3.7.0-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-genomeinfodb:

>=1.38.0,<1.39.0

depends bioconductor-genomicranges:

>=1.54.0,<1.55.0

depends bioconductor-genomicscores:

>=2.14.0,<2.15.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mafdb.exac.r1.0.nontcga.grch38

and update with::

   mamba update bioconductor-mafdb.exac.r1.0.nontcga.grch38

To create a new environment, run:

mamba create --name myenvname bioconductor-mafdb.exac.r1.0.nontcga.grch38

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.grch38:<tag>

(see `bioconductor-mafdb.exac.r1.0.nontcga.grch38/tags`_ for valid values for ``<tag>``)

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