recipe bioconductor-maigespack

Functions to handle cDNA microarray data, including several methods of data analysis

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/maigesPack.html

License:

GPL-3.0-or-later

Recipe:

/bioconductor-maigespack/meta.yaml

Links:

biotools: maigespack, doi: 10.1038/nmeth.3252

This package uses functions of various other packages together with other functions in a coordinated way to handle and analyse cDNA microarray data

package bioconductor-maigespack

versions:

1.64.0-1,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-1,  1.56.0-0, 

1.64.0-1,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-1,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-0

depends bioconductor-convert:

>=1.78.0,<1.79.0

depends bioconductor-convert:

>=1.78.0,<1.79.0a0

depends bioconductor-graph:

>=1.80.0,<1.81.0

depends bioconductor-graph:

>=1.80.0,<1.81.0a0

depends bioconductor-limma:

>=3.58.1,<3.59.0

depends bioconductor-limma:

>=3.58.1,<3.59.0a0

depends bioconductor-marray:

>=1.80.0,<1.81.0

depends bioconductor-marray:

>=1.80.0,<1.81.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-maigespack

and update with::

   mamba update bioconductor-maigespack

To create a new environment, run:

mamba create --name myenvname bioconductor-maigespack

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-maigespack:<tag>

(see `bioconductor-maigespack/tags`_ for valid values for ``<tag>``)

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