recipe bioconductor-makecdfenv

CDF Environment Maker

Homepage

https://bioconductor.org/packages/3.14/bioc/html/makecdfenv.html

License

GPL (>= 2)

Recipe

/bioconductor-makecdfenv/meta.yaml

Links

biotools: makecdfenv, doi: 10.1186/1471-2105-13-56

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

package bioconductor-makecdfenv

Versions

1.70.0-1,  1.70.0-0,  1.68.0-0,  1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.58.0-0, 

1.70.0-1,  1.70.0-0,  1.68.0-0,  1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-affyio >=1.64.0,<1.65.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-zlibbioc >=1.40.0,<1.41.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-altcdfenvs

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-makecdfenv

and update with:

conda update bioconductor-makecdfenv

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-makecdfenv:<tag>

(see bioconductor-makecdfenv/tags for valid values for <tag>)

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