recipe bioconductor-makecdfenv

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/makecdfenv.html

License

GPL (>= 2)

Recipe

/bioconductor-makecdfenv/meta.yaml

Links

biotools: makecdfenv, doi: 10.1186/1471-2105-13-56

package bioconductor-makecdfenv

Versions

1.58.0-0, 1.56.0-0, 1.54.0-0, 1.52.0-0

Depends

• bioconductor-affy >=1.60.0,<1.61.0

• bioconductor-affyio >=1.52.0,<1.53.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-zlibbioc >=1.28.0,<1.29.0

• libgcc-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

Required By

• bioconductor-altcdfenvs

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-makecdfenv

and update with:

conda update bioconductor-makecdfenv

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-makecdfenv:<tag>

(see bioconductor-makecdfenv/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-makecdfenv/README.html)