recipe bioconductor-makecdfenv

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/makecdfenv.html

License

GPL (>= 2)

Recipe

/bioconductor-makecdfenv/meta.yaml

Links

biotools: makecdfenv, doi: 10.1186/1471-2105-13-56

package bioconductor-makecdfenv

(downloads) docker_bioconductor-makecdfenv

Versions

1.58.0-0, 1.56.0-0, 1.54.0-0, 1.52.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-affyio

>=1.52.0,<1.53.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-makecdfenv

and update with:

conda update bioconductor-makecdfenv

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-makecdfenv:<tag>

(see bioconductor-makecdfenv/tags for valid values for <tag>)