recipe bioconductor-marinerdata

ExperimentHub data for the mariner package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/marinerData.html

License:

GPL-3

Recipe:

/bioconductor-marinerdata/meta.yaml

Subsampled Hi-C in HEK cells expressing the NHA9 fusion with an F to S mutated IDR ("FS") or without any mutations to the IDR ("Wildtype" or "WT"). These files are used for testing mariner functions and some examples.

package bioconductor-marinerdata

versions:

1.2.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-marinerdata

and update with::

   mamba update bioconductor-marinerdata

To create a new environment, run:

mamba create --name myenvname bioconductor-marinerdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-marinerdata:<tag>

(see `bioconductor-marinerdata/tags`_ for valid values for ``<tag>``)

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Link to this page

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