recipe bioconductor-mbamethyl

Model-based analysis of DNA methylation data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MBAmethyl.html

License

Artistic-2.0

Recipe

/bioconductor-mbamethyl/meta.yaml

Links

biotools: mbamethyl, doi: 10.1111/biom.12422

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

package bioconductor-mbamethyl

(downloads) docker_bioconductor-mbamethyl

Versions

1.22.0-01.20.0-01.18.0-11.18.0-01.16.0-01.14.0-01.12.0-01.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mbamethyl

and update with:

conda update bioconductor-mbamethyl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbamethyl:<tag>

(see bioconductor-mbamethyl/tags for valid values for <tag>)