- recipe bioconductor-mbecs
Evaluation and correction of batch effects in microbiome data-sets
- Homepage:
- License:
Artistic-2.0
- Recipe:
The Microbiome Batch Effect Correction Suite (MBECS) provides a set of functions to evaluate and mitigate unwated noise due to processing in batches. To that end it incorporates a host of batch correcting algorithms (BECA) from various packages. In addition it offers a correction and reporting pipeline that provides a preliminary look at the characteristics of a data-set before and after correcting for batch effects.
- package bioconductor-mbecs¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-phyloseq
>=1.42.0,<1.43.0
bioconductor-sva
>=3.46.0,<3.47.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-mbecs
and update with:
conda update bioconductor-mbecs
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mbecs:<tag>
(see bioconductor-mbecs/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mbecs/README.html)