recipe bioconductor-mbecs

Evaluation and correction of batch effects in microbiome data-sets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MBECS.html

License:

Artistic-2.0

Recipe:

/bioconductor-mbecs/meta.yaml

The Microbiome Batch Effect Correction Suite (MBECS) provides a set of functions to evaluate and mitigate unwated noise due to processing in batches. To that end it incorporates a host of batch correcting algorithms (BECA) from various packages. In addition it offers a correction and reporting pipeline that provides a preliminary look at the characteristics of a data-set before and after correcting for batch effects.

package bioconductor-mbecs

Versions:

1.2.0-0

Depends:

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-phyloseq >=1.42.0,<1.43.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-dplyr

• r-ggplot2

• r-gridextra

• r-lme4

• r-lmertest

• r-magrittr

• r-matrix

• r-pheatmap

• r-rmarkdown

• r-ruv

• r-tibble

• r-tidyr

• r-vegan

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mbecs

and update with:

conda update bioconductor-mbecs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mbecs:<tag>

(see bioconductor-mbecs/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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