recipe bioconductor-mbomic

Integrative analysis of the microbiome and metabolome






The mbOmic package contains a set of analysis functions for microbiomics and metabolomics data, designed to analyze the inter-omic correlation between microbiology and metabolites. Integrative analysis of the microbiome and metabolome is the aim of mbOmic. Additionally, the identification of enterotype using the gut microbiota abundance is preliminaryimplemented.

package bioconductor-mbomic

(downloads) docker_bioconductor-mbomic



depends r-base:


depends r-cluster:

depends r-clustersim:

depends r-data.table:

depends r-doparallel:

depends r-igraph:

depends r-psych:

depends r-visnetwork:

depends r-wgcna:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-mbomic

and update with::

   mamba update bioconductor-mbomic

To create a new environment, run:

mamba create --name myenvname bioconductor-mbomic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-mbomic/tags`_ for valid values for ``<tag>``)

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