- recipe bioconductor-mcsea
Methylated CpGs Set Enrichment Analysis
- Homepage:
- License:
GPL-2
- Recipe:
Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands…) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.
- package bioconductor-mcsea¶
-
- Versions:
1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-2
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-1
,1.2.0-0
- Depends:
bioconductor-biomart
>=2.54.0,<2.55.0
bioconductor-fgsea
>=1.24.0,<1.25.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-homo.sapiens
>=1.3.0,<1.4.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-mcseadata
>=1.18.0,<1.19.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-mcsea
and update with:
conda update bioconductor-mcsea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mcsea:<tag>
(see bioconductor-mcsea/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mcsea/README.html)