recipe bioconductor-mcsea

Methylated CpGs Set Enrichment Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/mCSEA.html

License:

GPL-2

Recipe:

/bioconductor-mcsea/meta.yaml

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands…) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

package bioconductor-mcsea

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-2,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-homo.sapiens >=1.3.0,<1.4.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-mcseadata >=1.18.0,<1.19.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mcsea

and update with:

conda update bioconductor-mcsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mcsea:<tag>

(see bioconductor-mcsea/tags for valid values for <tag>)

Download stats

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