-
recipe
bioconductor-mcsea
Methylated CpGs Set Enrichment Analysis
- Homepage
- License
GPL-2
- Recipe
Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands…) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.
-
package
bioconductor-mcsea
¶ -
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-1
,1.2.0-0
- Depends
bioconductor-biomart
>=2.46.0,<2.47.0
bioconductor-fgsea
>=1.16.0,<1.17.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-gviz
>=1.34.0,<1.35.0
bioconductor-homo.sapiens
>=1.3.0,<1.4.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-mcseadata
>=1.9.0,<1.10.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-mcsea
and update with:
conda update bioconductor-mcsea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-mcsea:<tag>
(see bioconductor-mcsea/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-mcsea/README.html)