Package Recipe 'bioconductor-mcsea'

recipe bioconductor-mcsea¶

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands…) from the human genome using Illumina’s 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/mCSEA.html
License: GPL-2
Recipe: /bioconductor-mcsea/meta.yaml

package bioconductor-mcsea¶

Versions: 1.2.0-0
Depends bioconductor-fgsea: >=1.8.0,<1.9.0
Depends bioconductor-genomicfeatures: >=1.34.0,<1.35.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-gviz: >=1.26.0,<1.27.0
Depends bioconductor-homo.sapiens: >=1.3.0,<1.4.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-limma: >=3.38.0,<3.39.0
Depends bioconductor-mcseadata: >=1.2.0,<1.3.0
Depends bioconductor-s4vectors: >=0.20.0,<0.21.0
Depends bioconductor-summarizedexperiment: >=1.12.0,<1.13.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-ggplot2
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mcsea

and update with:

conda update bioconductor-mcsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mcsea:<tag>

(see bioconductor-mcsea/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mcsea/README.html)