recipe bioconductor-mdqc

Mahalanobis Distance Quality Control for microarrays

Homepage

https://bioconductor.org/packages/3.11/bioc/html/mdqc.html

License

LGPL (>= 2)

Recipe

/bioconductor-mdqc/meta.yaml

Links

biotools: mdqc, doi: 10.1093/bioinformatics/btm487

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array’s quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

package bioconductor-mdqc

(downloads) docker_bioconductor-mdqc

Versions

1.50.0-0, 1.48.0-0, 1.46.0-1, 1.46.0-0, 1.44.0-0, 1.42.0-0, 1.40.0-0, 1.38.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mdqc

and update with:

conda update bioconductor-mdqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mdqc:<tag>

(see bioconductor-mdqc/tags for valid values for <tag>)