- recipe bioconductor-meat
Muscle Epigenetic Age Test
- Homepage:
- License:
MIT + file LICENSE
- Recipe:
This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).
- package bioconductor-meat¶
- versions:
1.12.0-0,1.10.0-0,1.6.0-0,1.4.0-0,1.2.2-0,1.2.0-0,1.0.0-0- depends bioconductor-impute:
>=1.74.0,<1.75.0- depends bioconductor-minfi:
>=1.46.0,<1.47.0- depends bioconductor-summarizedexperiment:
>=1.30.0,<1.31.0- depends bioconductor-watermelon:
>=2.6.0,<2.7.0- depends r-base:
>=4.3,<4.4.0a0- depends r-dplyr:
- depends r-dynamictreecut:
>=1.63- depends r-glmnet:
>=2.0- depends r-rpmm:
>=1.25- depends r-stringr:
- depends r-tibble:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-meat and update with:: mamba update bioconductor-meat
To create a new environment, run:
mamba create --name myenvname bioconductor-meat
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-meat:<tag> (see `bioconductor-meat/tags`_ for valid values for ``<tag>``)
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Link to this page¶
Render an 
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