recipe bioconductor-medipsdata

Example data for MEDIPS and QSEA packages



GPL (>= 2)



Example data for MEDIPS and QSEA packages, consisting of chromosome 22 MeDIP and control/Input sample data. Additionally, the package contains MeDIP seq data from 3 NSCLC samples and adjacent normal tissue (chr 20-22). All data has been aligned to human genome hg19.

package bioconductor-medipsdata

(downloads) docker_bioconductor-medipsdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-medipsdata

and update with::

   mamba update bioconductor-medipsdata

To create a new environment, run:

mamba create --name myenvname bioconductor-medipsdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-medipsdata/tags`_ for valid values for ``<tag>``)

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