recipe bioconductor-meshdbi

DBI to construct MeSH-related package from sqlite file

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/MeSHDbi.html

License:

Artistic-2.0

Recipe:

/bioconductor-meshdbi/meta.yaml

Links:

biotools: meshdbi

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

package bioconductor-meshdbi

(downloads) docker_bioconductor-meshdbi

versions:
1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0

depends bioconductor-annotationdbi:

>=1.68.0,<1.69.0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends r-base:

>=4.4,<4.5.0a0

depends r-rsqlite:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-meshdbi

and update with::

   mamba update bioconductor-meshdbi

To create a new environment, run:

mamba create --name myenvname bioconductor-meshdbi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-meshdbi:<tag>

(see `bioconductor-meshdbi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-meshdbi/README.html)