recipe bioconductor-meshdbi

DBI to construct MeSH-related package from sqlite file

Homepage

https://bioconductor.org/packages/3.12/bioc/html/MeSHDbi.html

License

Artistic-2.0

Recipe

/bioconductor-meshdbi/meta.yaml

Links

biotools: meshdbi

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

package bioconductor-meshdbi

Versions

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0

Depends

• bioconductor-annotationdbi >=1.52.0,<1.53.0

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• r-base >=4.0,<4.1.0a0

• r-rsqlite

Required By

• bioconductor-mesh.eco.ed1a.eg.db

• bioconductor-mesh.pae.pao1.eg.db

• bioconductor-mesh.dya.eg.db

• bioconductor-mesh.tgo.me49.eg.db

• bioconductor-mesh.eco.o157.h7.sakai.eg.db

• bioconductor-mesh.miy.eg.db

• bioconductor-mesh.gga.eg.db

• bioconductor-mesh.pcr.db

• bioconductor-mesh.mdo.eg.db

• bioconductor-mesh.pfa.3d7.eg.db

• bioconductor-mesh.cfa.eg.db

• bioconductor-mesh.hsa.eg.db

• bioconductor-mesh.pab.eg.db

• bioconductor-mesh.eco.umn026.eg.db

• bioconductor-mesh.dvi.eg.db

• bioconductor-mesh.cja.eg.db

• bioconductor-mesh.eco.k12.mg1655.eg.db

• bioconductor-mesh.xtr.eg.db

• bioconductor-mesh.dpe.eg.db

• bioconductor-mesh.ssc.eg.db

• bioconductor-mesh.zma.eg.db

• bioconductor-mesh.syn.eg.db

• bioconductor-mesh.dan.eg.db

• bioconductor-mesh.aor.db

• bioconductor-mesh.osa.eg.db

• bioconductor-mesh.bta.eg.db

• bioconductor-mesh.dse.eg.db

• bioconductor-mesh.oan.eg.db

• bioconductor-mesh.tbr.9274.eg.db

• bioconductor-mesh.cin.eg.db

• bioconductor-mesh.aml.eg.db

• bioconductor-mesh.sco.a32.eg.db

• bioconductor-mesh.sce.s288c.eg.db

• bioconductor-mesh.cre.eg.db

• bioconductor-mesh.eco.iai39.eg.db

• bioconductor-mesh.eqc.eg.db

• bioconductor-mesh.der.eg.db

• bioconductor-mesh.pto.eg.db

• bioconductor-mesh.ath.eg.db

• bioconductor-mesh.ana.eg.db

• bioconductor-mesh.rno.eg.db

• bioconductor-mesh.dre.eg.db

• bioconductor-mesh.gma.eg.db

• bioconductor-mesh.oni.eg.db

• bioconductor-mesh.xla.eg.db

• bioconductor-mesh.mmu.eg.db

• bioconductor-mesh.laf.eg.db

• bioconductor-mesh.ani.fgsc.eg.db

• bioconductor-mesh.ocu.eg.db

• bioconductor-mesh.lma.eg.db

• bioconductor-mesh.cal.sc5314.eg.db

• bioconductor-mesh.aca.eg.db

• bioconductor-mesh.mml.eg.db

• bioconductor-mesh.db

• bioconductor-mesh.nle.eg.db

• bioconductor-mesh.mga.eg.db

• bioconductor-mesh.dsi.eg.db

• bioconductor-mesh.spu.eg.db

• bioconductor-mesh.tgu.eg.db

• bioconductor-mesh.vvi.eg.db

• bioconductor-mesh.bsu.168.eg.db

• bioconductor-mesh.eco.55989.eg.db

• bioconductor-mesh.aga.pest.eg.db

• bioconductor-mesh.dmo.eg.db

• bioconductor-mesh.bfl.eg.db

• bioconductor-mesh.cpo.eg.db

• bioconductor-meshr

• bioconductor-mesh.ame.eg.db

• bioconductor-sctensor

• bioconductor-mesh.dda.3937.eg.db

• bioconductor-mesh.cbr.eg.db

• bioconductor-mesh.mtr.eg.db

• bioconductor-mesh.ddi.ax4.eg.db

• bioconductor-mesh.ptr.eg.db

• bioconductor-mesh.sil.eg.db

• bioconductor-mesh.cel.eg.db

• bioconductor-mesh.dme.eg.db

• bioconductor-mesh.dgr.eg.db

• bioconductor-mesh.mes.eg.db

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-meshdbi

and update with:

conda update bioconductor-meshdbi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-meshdbi:<tag>

(see bioconductor-meshdbi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-meshdbi/README.html)