recipe bioconductor-metaboannotation

Utilities for Annotation of Metabolomics Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MetaboAnnotation.html

License:

Artistic-2.0

Recipe:

/bioconductor-metaboannotation/meta.yaml

High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.

package bioconductor-metaboannotation

Versions:

1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-compounddb >=1.2.0,<1.3.0

• bioconductor-metabocoreutils >=1.6.0,<1.7.0

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-qfeatures >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-spectra >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-metaboannotation

and update with:

conda update bioconductor-metaboannotation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metaboannotation:<tag>

(see bioconductor-metaboannotation/tags for valid values for <tag>)

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