recipe bioconductor-metabosignal

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MetaboSignal.html

License:

GPL-3

Recipe:

/bioconductor-metabosignal/meta.yaml

Links:

biotools: metabosignal

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

package bioconductor-metabosignal

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-ensdb.hsapiens.v75 >=2.99.0,<2.100.0

• bioconductor-hpar >=1.40.0,<1.41.0

• bioconductor-kegggraph >=1.58.0,<1.59.0

• bioconductor-keggrest >=1.38.0,<1.39.0

• bioconductor-mwastools >=1.22.0,<1.23.0

• bioconductor-mygene >=1.34.0,<1.35.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• r-base >=4.2,<4.3.0a0

• r-igraph

• r-rcurl

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-metabosignal

and update with:

conda update bioconductor-metabosignal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metabosignal:<tag>

(see bioconductor-metabosignal/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metabosignal/README.html)