recipe bioconductor-metabosignal

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MetaboSignal.html

License

GPL-3

Recipe

/bioconductor-metabosignal/meta.yaml

Links

biotools: metabosignal

package bioconductor-metabosignal

(downloads) docker_bioconductor-metabosignal

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-ensdb.hsapiens.v75

>=2.99.0,<2.100.0

Depends bioconductor-hpar

>=1.24.0,<1.25.0

Depends bioconductor-kegggraph

>=1.42.0,<1.43.0

Depends bioconductor-keggrest

>=1.22.0,<1.23.0

Depends bioconductor-mwastools

>=1.6.0,<1.7.0

Depends bioconductor-mygene

>=1.18.0,<1.19.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-igraph

Depends r-rcurl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metabosignal

and update with:

conda update bioconductor-metabosignal

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metabosignal:<tag>

(see bioconductor-metabosignal/tags for valid values for <tag>)