recipe bioconductor-metagxbreast

Transcriptomic Breast Cancer Datasets



Apache License (>= 2)



A collection of Breast Cancer Transcriptomic Datasets that are part of the MetaGxData package compendium.

package bioconductor-metagxbreast

(downloads) docker_bioconductor-metagxbreast



depends bioconductor-annotationhub:


depends bioconductor-biobase:


depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends bioconductor-impute:


depends bioconductor-summarizedexperiment:


depends curl:

depends r-base:


depends r-lattice:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-metagxbreast

and update with::

   mamba update bioconductor-metagxbreast

To create a new environment, run:

mamba create --name myenvname bioconductor-metagxbreast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-metagxbreast/tags`_ for valid values for ``<tag>``)

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