recipe bioconductor-metapod

Meta-Analyses on P-Values of Differential Analyses

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/metapod.html

License:

GPL-3

Recipe:

/bioconductor-metapod/meta.yaml

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

package bioconductor-metapod

versions:

1.14.0-0,  1.10.0-3,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-2,  1.6.0-1,  1.6.0-0, 

1.14.0-0,  1.10.0-3,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-2,  1.6.0-1,  1.6.0-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc:

>=13

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx:

>=13

depends r-base:

>=4.4,<4.5.0a0

depends r-rcpp:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-metapod

and update with::

   mamba update bioconductor-metapod

To create a new environment, run:

mamba create --name myenvname bioconductor-metapod

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-metapod:<tag>

(see `bioconductor-metapod/tags`_ for valid values for ``<tag>``)

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