recipe bioconductor-metaseq

Meta-analysis of RNA-Seq count data in multiple studies

Homepage

https://bioconductor.org/packages/3.11/bioc/html/metaSeq.html

License

Artistic-2.0

Recipe

/bioconductor-metaseq/meta.yaml

Links

biotools: metaseq, doi: 10.1038/nmeth.3252

The probabilities by one-sided NOISeq are combined by Fisher’s method or Stouffer’s method

package bioconductor-metaseq

Versions

1.28.0-0, 1.26.0-0, 1.24.0-1, 1.22.1-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends

• bioconductor-noiseq >=2.31.0,<2.32.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-rcpp

• r-snow

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metaseq

and update with:

conda update bioconductor-metaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metaseq:<tag>

(see bioconductor-metaseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metaseq/README.html)