recipe bioconductor-metaseq

Meta-analysis of RNA-Seq count data in multiple studies

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/metaSeq.html

License:

Artistic-2.0

Recipe:

/bioconductor-metaseq/meta.yaml

Links:

biotools: metaseq, doi: 10.1038/nmeth.3252

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method

package bioconductor-metaseq

Versions:

1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.1-0, 

1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.1-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends:

• bioconductor-noiseq >=2.38.0,<2.39.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-rcpp

• r-snow

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-metaseq

and update with:

conda update bioconductor-metaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metaseq:<tag>

(see bioconductor-metaseq/tags for valid values for <tag>)

Download stats

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