recipe bioconductor-metaseqr2

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

Homepage

https://bioconductor.org/packages/3.14/bioc/html/metaseqR2.html

License

GPL (>= 3)

Recipe

/bioconductor-metaseqr2/meta.yaml

Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.

package bioconductor-metaseqr2

Versions

1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.11-0

Depends

• bioconductor-absseq >=1.48.0,<1.49.0

• bioconductor-bayseq >=2.28.0,<2.29.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-dss >=2.42.0,<2.43.0

• bioconductor-edaseq >=2.28.0,<2.29.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-qvalue >=2.26.0,<2.27.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-survcomp >=1.44.0,<1.45.0

• bioconductor-vsn >=3.62.0,<3.63.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.4.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-corrplot

• r-dt

• r-gplots

• r-harmonicmeanp

• r-heatmaply

• r-htmltools

• r-httr

• r-jsonlite

• r-lattice

• r-locfit

• r-log4r

• r-magrittr

• r-mass

• r-matrix

• r-nbpseq

• r-pander

• r-rmarkdown

• r-rmdformats

• r-rsqlite

• r-stringr

• r-venndiagram

• r-yaml

• r-zoo

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metaseqr2

and update with:

conda update bioconductor-metaseqr2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metaseqr2:<tag>

(see bioconductor-metaseqr2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metaseqr2/README.html)