recipe bioconductor-metaseqr2

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/metaseqR2.html

License:

GPL (>= 3)

Recipe:

/bioconductor-metaseqr2/meta.yaml

Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.

package bioconductor-metaseqr2

Versions:

1.10.0-0,  1.6.1-1,  1.6.1-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.11-0

Depends:

• bioconductor-absseq >=1.52.0,<1.53.0

• bioconductor-bayseq >=2.31.0,<2.32.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-dss >=2.46.0,<2.47.0

• bioconductor-edaseq >=2.32.0,<2.33.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-survcomp >=1.48.0,<1.49.0

• bioconductor-vsn >=3.66.0,<3.67.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-corrplot

• r-dt

• r-gplots

• r-harmonicmeanp

• r-heatmaply

• r-htmltools

• r-httr

• r-jsonlite

• r-lattice

• r-locfit

• r-log4r

• r-magrittr

• r-mass

• r-matrix

• r-nbpseq

• r-pander

• r-rmarkdown

• r-rmdformats

• r-rsqlite

• r-stringr

• r-venndiagram

• r-yaml

• r-zoo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-metaseqr2

and update with:

conda update bioconductor-metaseqr2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metaseqr2:<tag>

(see bioconductor-metaseqr2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metaseqr2/README.html)