- recipe bioconductor-metaseqr2
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/metaseqR2.html
- License
GPL (>= 3)
- Recipe
Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.
- package bioconductor-metaseqr2¶
-
- Versions
1.6.1-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.11-0
- Depends
bioconductor-absseq
>=1.48.0,<1.49.0
bioconductor-bayseq
>=2.28.0,<2.29.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-dss
>=2.42.0,<2.43.0
bioconductor-edaseq
>=2.28.0,<2.29.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genefilter
>=1.76.0,<1.77.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-qvalue
>=2.26.0,<2.27.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-survcomp
>=1.44.0,<1.45.0
bioconductor-vsn
>=3.62.0,<3.63.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-metaseqr2
and update with:
conda update bioconductor-metaseqr2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-metaseqr2:<tag>
(see bioconductor-metaseqr2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-metaseqr2/README.html)