bioconductor-metcirc

downloads

MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data: create an MSP object, a format for MS/MS library data, bin m/z values of precursors, calculate similarity between precursors based on the normalised dot product and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.

Home http://bioconductor.org/packages/3.6/bioc/html/MetCirc.html
Versions 1.2.0, 1.6.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-metcirc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metcirc

and update with:

conda update bioconductor-metcirc

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-metcirc.