- recipe bioconductor-metcirc
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/MetCirc.html
- License:
GPL (>= 3)
- Recipe:
- Links:
biotools: metcirc, doi: 10.1093/bioinformatics/btx159
MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data. MetCirc uses the Spectra object infrastructure defined in the package Spectra that stores MS/MS spectra. MetCirc offers functionality to calculate similarity between precursors based on the normalised dot product, neutral losses or user-defined functions and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.
- package bioconductor-metcirc¶
-
- Versions:
1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.1-0
,1.10.0-0
,1.6.0-0
,1.2.0-0
- Depends:
bioconductor-mscoreutils
>=1.10.0,<1.11.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-spectra
>=1.8.0,<1.9.0
r-amap
>=0.8
r-base
>=4.2,<4.3.0a0
r-circlize
>=0.3.9
r-ggplot2
>=3.2.1
r-scales
>=0.3.0
r-shiny
>=1.0.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-metcirc
and update with:
conda update bioconductor-metcirc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-metcirc:<tag>
(see bioconductor-metcirc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-metcirc/README.html)