recipe bioconductor-metcirc

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MetCirc.html

License

GPL (>= 3)

Recipe

/bioconductor-metcirc/meta.yaml

Links

biotools: metcirc, doi: 10.1093/bioinformatics/btx159

MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data. MetCirc uses the Spectrum2 and Spectra infrastructure defined in the package MSnbase that stores MS/MS spectra. MetCirc offers functionality to calculate similarity between precursors based on the normalised dot product, neutral losses or user-defined functions and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.

package bioconductor-metcirc

(downloads) docker_bioconductor-metcirc

Versions

1.18.0-0, 1.16.0-0, 1.14.0-1, 1.14.0-0, 1.12.1-0, 1.10.0-0, 1.6.0-0, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metcirc

and update with:

conda update bioconductor-metcirc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metcirc:<tag>

(see bioconductor-metcirc/tags for valid values for <tag>)