-
recipe
bioconductor-methped
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/MethPed.html
- License
GPL-2
- Recipe
- Links
biotools: methped, doi: 10.1186/s13148-015-0103-3
Classification of pediatric tumors into biologically defined subtypes is challenging and multifaceted approaches are needed. For this aim, we developed a diagnostic classifier based on DNA methylation profiles. We offer MethPed as an easy-to-use toolbox that allows researchers and clinical diagnosticians to test single samples as well as large cohorts for subclass prediction of pediatric brain tumors. The current version of MethPed can classify the following tumor diagnoses/subgroups: Diffuse Intrinsic Pontine Glioma (DIPG), Ependymoma, Embryonal tumors with multilayered rosettes (ETMR), Glioblastoma (GBM), Medulloblastoma (MB) - Group 3 (MB_Gr3), Group 4 (MB_Gr3), Group WNT (MB_WNT), Group SHH (MB_SHH) and Pilocytic Astrocytoma (PiloAstro).
-
package
bioconductor-methped
¶ -
- Versions
1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.1-0
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methped
and update with:
conda update bioconductor-methped
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methped:<tag>
(see bioconductor-methped/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methped/README.html)